PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J170300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 355aa    MW: 39208.1 Da    PI: 7.4059
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J170300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011281301222
                        EETTTTEEESSHHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                         C+ C  +++r+s+L++H+r 
  Pavir.J170300.1.p 281 ICSLCQARCTRQSELENHLRG 301
                        7******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.026156190IPR003604Zinc finger, U1-type
SuperFamilySSF576674.93E-6158194No hitNo description
PfamPF128743.7E-7159183No hitNo description
SMARTSM003550.25159183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.17E-7209246No hitNo description
SMARTSM004510.031212246IPR003604Zinc finger, U1-type
PfamPF128740.005215239No hitNo description
SMARTSM0035514215239IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217239IPR007087Zinc finger, C2H2
SuperFamilySSF576676.83E-10258308No hitNo description
SMARTSM004510.014277311IPR003604Zinc finger, U1-type
PfamPF128745.0E-8280304No hitNo description
SMARTSM003550.058280304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280282304IPR007087Zinc finger, C2H2
SuperFamilySSF576679.17E-9313351No hitNo description
SMARTSM004510.26320354IPR003604Zinc finger, U1-type
SMARTSM0035517323347IPR015880Zinc finger, C2H2-like
PfamPF128743.6E-5324347No hitNo description
PROSITE patternPS000280325347IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTVLPDGTYE LIQESEGGDP KVQANAAELT EAAPYQSSEE PKAEILGKIE CALALGSADA  60
ERAKPAAPFA FNKQVSHGRG SVDPERDVDV DEVHDPKKKD EAHGRVERES EKPATADLVD  120
ECLRTSGGNG KAAGQENAAP DESSETMLPK KTFPCSVKWT CSICQVKATS QGNLREHFAG  180
QKHWSKVASL VSKNNAKSQK AKETAEKSGN ALSMWACRFC QSNCTCQSDL ENHRKGKRHQ  240
RNIRALMEEC KNMESNYASP KVKSDLNNVP QDEEGRVPTW ICSLCQARCT RQSELENHLR  300
GKRHRLNFLL LQEEEAKLYL SLSFCEVCNL QCNSEKMLAH HRTGKKHLAK LNGC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J170300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309445.13e-90zinc finger RNA-binding protein
RefseqXP_025801575.12e-90UBP1-associated proteins 1C-like
TrEMBLA0A1W0W5913e-89A0A1W0W591_SORBI; Uncharacterized protein
TrEMBLA0A3L6QNB27e-89A0A3L6QNB2_PANMI; Uncharacterized protein
STRINGPavir.J27217.1.p0.0(Panicum virgatum)