PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J172100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 359aa MW: 41694 Da PI: 10.0836

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J172100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.4	4e-12	7	62	26	90
FAR1 26 geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + t+++fvCs+eg++++++ a+ rt+Cka++++ +++d+ w++++++ HnH+++ Pavir.J172100.1.p 7 EYRTRQDFVCSCEGTDKSTTA---------ASIRTECKAMIRLLRQNDHSWYISRVVDTHNHPFS 62 4468999*****9888654.........59****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-9	7	62	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-26	184	276	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
GCKNSKEYRT RQDFVCSCEG TDKSTTAASI RTECKAMIRL LRQNDHSWYI SRVVDTHNHP 60 FSAGYGENKQ WKSHSDIDPL TKDLVKKLRE NNISVGRICN ILGVSDATSS KTMRKESIRS 120 LCAKLSQENM KDDIGKTMGL LEDMKKTDPG LEVRFQMDSS GAMKTMLWCT GKNRVDYENF 180 GDAITFDTTY RTNLYSLPFG LFVGVNNHFQ SIVFGGVLLT SEKTIDFEWA FTNFVEIMNG 240 KAPLTMLTDQ CAAMAKAIKS TLRTTRHRWC RWHVLKDAKK KLGNIYSKRK KFKREFNKLI 300 TDEIDIRRFE NEWVKLLKEY RLVKNKYLKR LFKHRDKWAK PYFMDIFCAG MTSTQRSES

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

GCKNSKEYRT RQDFVCSCEG TDKSTTAASI RTECKAMIRL LRQNDHSWYI SRVVDTHNHP  60
FSAGYGENKQ WKSHSDIDPL TKDLVKKLRE NNISVGRICN ILGVSDATSS KTMRKESIRS  120
LCAKLSQENM KDDIGKTMGL LEDMKKTDPG LEVRFQMDSS GAMKTMLWCT GKNRVDYENF  180
GDAITFDTTY RTNLYSLPFG LFVGVNNHFQ SIVFGGVLLT SEKTIDFEWA FTNFVEIMNG  240
KAPLTMLTDQ CAAMAKAIKS TLRTTRHRWC RWHVLKDAKK KLGNIYSKRK KFKREFNKLI  300
TDEIDIRRFE NEWVKLLKEY RLVKNKYLKR LFKHRDKWAK PYFMDIFCAG MTSTQRSES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J172100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310926.1	0.0	protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1B6Q0S6	0.0	A0A1B6Q0S6_SORBI; Uncharacterized protein
STRING	Pavir.J24972.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-54	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.J172100.1.p