PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J178300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 582aa    MW: 62735.6 Da    PI: 5.6587
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J178300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3413.42.6e-126644271354
                        XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
               EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 
                        eel++rmw+d+ +l+rlke++      kea         ++eqarrkkms aQDgiLkYMlk+mevcnaqGfvYgiipe+gkpv+gasd+Lr
  Pavir.J178300.1.p  64 EELERRMWRDRLRLRRLKEQQGG----KEA-------APRQEQARRKKMSCAQDGILKYMLKMMEVCNAQGFVYGIIPENGKPVTGASDNLR 144
                        8****************999987....444.......4689*************************************************** PP

                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHH CS
               EIN3  93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgel 184
                        aWWk+kv+fdrngpaa + yqa+n++++g+    + +   +hsl+elqDTtlgSLLsalmqhcdppqrrfpl+kgv+pPWWP        e+
  Pavir.J178300.1.p 145 AWWKDKVRFDRNGPAAAARYQADNAAPGGGAAAAA-APPGPHSLHELQDTTLGSLLSALMQHCDPPQRRFPLDKGVPPPWWP--------EA 227
                        ****************************9999955.99*****************************************887........56 PP

                        T--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXXXXX CS
               EIN3 185 glskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqspkv 274
                        g++ d g+ppykkphdlkkawkv+vLtavikhmsp+++++r+l+rqsk+lqdkm+a+e  ++l+vl+qee+++   ++   ++ +++ +   
  Pavir.J178300.1.p 228 GVPGDLGPPPYKKPHDLKKAWKVAVLTAVIKHMSPDVDKVRRLVRQSKCLQDKMTAREIVTWLAVLKQEEDLYLMQHPGalPPPSSNAAVLP 319
                        899*********************************************************************97777766533333333333 PP

                        XXXXXXXXXXXXXXXXX.XXXXXXXXXX.........................XXXXXXXXXXXXX....XXXXXXXX......XXXXXXX. CS
               EIN3 275 tlsceqkedvegkkeskikhvqavktta.........................gfpvvrkrkkkps....esakvsskevsrtcqssqfrgs 337
                        +  ++ ++dv+g ++ + ++ ++ k ++                         ++++ +kr +  +     + + s++   +tc ++ +++s
  Pavir.J178300.1.p 320 FSTSSGEYDVDGADDGE-ETGRNPKPASnaapafvdlsssmdatavlikeetaKLEFFQKRSAAAGvepePELMLSNSFRAYTCSNAPCPHS 410
                        44556689999555444.233333332345689999*****************99999**997543222044555666789*********** PP

                        XXXXXXXXXXXXXXXXX CS
               EIN3 338 etelifadknsisqney 354
                        ++ ++f d+ +++ ++y
  Pavir.J178300.1.p 411 SSVHGFLDRGERNAHQY 427
                        ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.9E-11364297No hitNo description
Gene3DG3DSA:1.10.3180.101.1E-59182304IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167685.36E-51185300IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MMGGGALVLD QRMPADDKAP LFGFGPGECF LGEGDLVNPA PAHDDMMSGF PDGDESDDDV  60
GGIEELERRM WRDRLRLRRL KEQQGGKEAA PRQEQARRKK MSCAQDGILK YMLKMMEVCN  120
AQGFVYGIIP ENGKPVTGAS DNLRAWWKDK VRFDRNGPAA AARYQADNAA PGGGAAAAAA  180
PPGPHSLHEL QDTTLGSLLS ALMQHCDPPQ RRFPLDKGVP PPWWPEAGVP GDLGPPPYKK  240
PHDLKKAWKV AVLTAVIKHM SPDVDKVRRL VRQSKCLQDK MTAREIVTWL AVLKQEEDLY  300
LMQHPGALPP PSSNAAVLPF STSSGEYDVD GADDGEETGR NPKPASNAAP AFVDLSSSMD  360
ATAVLIKEET AKLEFFQKRS AAAGVEPEPE LMLSNSFRAY TCSNAPCPHS SSVHGFLDRG  420
ERNAHQYTCK FNTPADSNKL APSVFPPAGQ GVDFDLPVDG QRSLAELIDM YEANMGAPRR  480
LSGIDDTAAP GGVQVSGTFL TPWLFGGATA TNGVMQQQQQ QQQSAGFYVR DDALPFGGDI  540
AAASRELRFS SGLNVPGSTA HYGGASQLQQ PHKPAGSNWF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-601842993126Protein ETHYLENE INSENSITIVE 3
4zds_B2e-601842993126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.14360.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots (PubMed:19798512). Expressed at low levels in panicles (PubMed:19798512). Expressed in roots, leaf blades, leaf sheaths, stems, anthers of young flowers, shells, and developing grains (PubMed:25995326). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:25995326}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512, PubMed:25995326). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Required for ethylene-promoted coleoptile elongation (PubMed:25995326). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:25995326}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J178300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and metyhl jasmonate. {ECO:0000269|PubMed:19798512}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280140.0KJ728014.1 Zea mays clone pUT6150 EIL transcription factor (EIL6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802438.10.0ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ8W3L90.0EIL2_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 2
TrEMBLA0A3L6QSU90.0A0A3L6QSU9_PANMI; ETHYLENE INSENSITIVE 3-like 1 protein
STRINGPavir.J01001.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20770.11e-121EIL family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Yang C, et al.
    MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
    Plant Physiol., 2015. 169(1): p. 148-65
    [PMID:25995326]