PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J182100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 260aa    MW: 27207.6 Da    PI: 10.7881
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J182100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.77.4e-11234258125
                        ---SS-EEEEEEE--TT-SS-EEEE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYY 25 
                        ldDgy+WrKYGqK+vk++++pr  Y
  Pavir.J182100.1.p 234 LDDGYKWRKYGQKVVKNTQHPRYIY 258
                        59********************766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-13219258IPR003657WRKY domain
SuperFamilySSF1182903.53E-10226258IPR003657WRKY domain
PROSITE profilePS5081114.056229259IPR003657WRKY domain
PfamPF031061.1E-7235258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVYHTDTTIP GRTAQTLCYL LVGKAKLERE TQRKGKPRDQ REMLPSPGRA VMALGHGQHT  60
SSTAAGAAMA AAAASSTPTI TFSFQPSPPP PTSFLAHHGV LGYTSLLLDH PPTATTSSSS  120
SHAPSSAIPP PTLHHFHAAA HVSPPTRSSP ITPPHQWSTA GDGGHDQGQG RQRGKGSAAA  180
SEGLAAAGHN NGAAAALGVG AVRMKKAGGG GGKARRKVRE PRFCFKTMSD VDVLDDGYKW  240
RKYGQKVVKN TQHPRYIYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J182100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9636462e-80EU963646.1 Zea mays clone 265112 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818604.16e-79probable WRKY transcription factor 13
TrEMBLA0A2T7DS181e-82A0A2T7DS18_9POAL; Uncharacterized protein
STRINGPavir.J40260.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.14e-19WRKY DNA-binding protein 13