PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J183900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 590aa MW: 68584.5 Da PI: 7.9913

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J183900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.3e-22	26	117	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YAk GFsvr+++ + ++e + ++fvCs++g+ree++ k ++k+r++ + tr gC akl++ +++ +g+w+v+++ eHnH+++ Pavir.J183900.1.p 26 EFYNNYAKGKGFSVRRDYCEWDIGHNERILQHFVCSCQGFREEKELKrENKKRKPWNITRFGCPAKLVIARDQnTGRWHVKDFICEHNHQMV 117 6*****************9988999999*******999877578888999***********999**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-20	26	117	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-30	225	312	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MQEGMPGAEY NVIVRKVFDD EEEGYEFYNN YAKGKGFSVR RDYCEWDIGH NERILQHFVC 60 SCQGFREEKE LKRENKKRKP WNITRFGCPA KLVIARDQNT GRWHVKDFIC EHNHQMVQQD 120 LACLLQSHRR IRDEQKADIV AMQISGICKH QIMDIMEMLY GGYDKVGFTR RDPNNFCHRN 180 KVDTVAARDA QTVISYLTGC RRRYPDFFFD YKTGEKGHLK GLLYTYKMNR YNMSLVPFVG 240 VNQHGSTVLF ACGVTSRETF EAYVWMLKTF TEAMAQKHPI SVITDGDLAM QRAIELVWPN 300 SSHRLCIWHI EQCIVRNLHD DGVKEDLRHF LYDCCSIEEI DRKWLQFMDK HNVTDTESWV 360 YQMYERRQVW CAAYHVGKCY LGLRSNQRSE SLNSRLQVTL DRKMTLFELV EHFDHCLSRL 420 RVNEVILDLV AMSFVPCLEP DASIIEKEAA KSFTPSVFAT VQFSIKAAKK CFAIEIEDDG 480 YERIKYIVGR EDKGDREHYV ESSRSPEAYE RLKHVLEEEA AMMLPNGGEI AGNRYGLVLL 540 QAVNVDSTEC RDVLDPMYIP GRGAPKKKLK SNKNKSKRKC TLCKGNKAP*

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MQEGMPGAEY NVIVRKVFDD EEEGYEFYNN YAKGKGFSVR RDYCEWDIGH NERILQHFVC  60
SCQGFREEKE LKRENKKRKP WNITRFGCPA KLVIARDQNT GRWHVKDFIC EHNHQMVQQD  120
LACLLQSHRR IRDEQKADIV AMQISGICKH QIMDIMEMLY GGYDKVGFTR RDPNNFCHRN  180
KVDTVAARDA QTVISYLTGC RRRYPDFFFD YKTGEKGHLK GLLYTYKMNR YNMSLVPFVG  240
VNQHGSTVLF ACGVTSRETF EAYVWMLKTF TEAMAQKHPI SVITDGDLAM QRAIELVWPN  300
SSHRLCIWHI EQCIVRNLHD DGVKEDLRHF LYDCCSIEEI DRKWLQFMDK HNVTDTESWV  360
YQMYERRQVW CAAYHVGKCY LGLRSNQRSE SLNSRLQVTL DRKMTLFELV EHFDHCLSRL  420
RVNEVILDLV AMSFVPCLEP DASIIEKEAA KSFTPSVFAT VQFSIKAAKK CFAIEIEDDG  480
YERIKYIVGR EDKGDREHYV ESSRSPEAYE RLKHVLEEEA AMMLPNGGEI AGNRYGLVLL  540
QAVNVDSTEC RDVLDPMYIP GRGAPKKKLK SNKNKSKRKC TLCKGNKAP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	78	LKRENKKRK
2	564	570	PKKKLKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J183900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021309019.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453B6N6	0.0	A0A453B6N6_AEGTS; Uncharacterized protein
STRING	Pavir.J22474.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-66	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.J183900.1.p