PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J194900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 430aa MW: 49692.8 Da PI: 9.1557

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J194900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.8e-23	96	184	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrnge.itkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 f++ YA++ GF +r+++++ s++ ++ +k+ fvC+++gk + ++++ ++rr++++ rt Ck +++vk++ +++w+v+ ++l+HnHelap Pavir.J194900.1.p 96 FFKVYARKKGFAIRRDSTYASRDLQSgGIKQVFVCNRQGKMAGNDDS-GRKRRSNVVVRTYCKVSMRVKLD-SNQWKVIGVNLKHNHELAP 184 9******************654431699*********9999.9******************.99************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-20	96	184	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.5E-29	295	388	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MGAQHHNLVE RFNMKFARES PQAGDAANFA NEEALEQHYD DGDIDNMLMA EEPTAEEVEM 60 DSMFSEADYP TLIEIENAGE PEIGMTFKTR EEAYHFFKVY ARKKGFAIRR DSTYASRDLQ 120 SGGIKQVFVC NRQGKMAGND DSGRKRRSNV VVRTYCKVSM RVKLDSNQWK VIGVNLKHNH 180 ELAPSICMTT RKKKFIEILQ NSRVHPRKVM SIFRMLRSHL RAVGFDAKDV SNLKKPGKQK 240 HRNIDVHELL CLFRERQKQI PGFCYSMQTY EDGTTRSVFW TDAVGWANYK SYGDYISFDT 300 TFSTNVYDMP FAPIVGVDNH GKTILFGCAL LKEQTTETFE WLFDTFLIAN DGKMPQTIIT 360 DQDQSMANAL DSRFPMSVRR FRYWHIIKVM KQKQYAFFKA RKGLYREINT THPLFMANLA 420 LTLLIYHAL*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MGAQHHNLVE RFNMKFARES PQAGDAANFA NEEALEQHYD DGDIDNMLMA EEPTAEEVEM  60
DSMFSEADYP TLIEIENAGE PEIGMTFKTR EEAYHFFKVY ARKKGFAIRR DSTYASRDLQ  120
SGGIKQVFVC NRQGKMAGND DSGRKRRSNV VVRTYCKVSM RVKLDSNQWK VIGVNLKHNH  180
ELAPSICMTT RKKKFIEILQ NSRVHPRKVM SIFRMLRSHL RAVGFDAKDV SNLKKPGKQK  240
HRNIDVHELL CLFRERQKQI PGFCYSMQTY EDGTTRSVFW TDAVGWANYK SYGDYISFDT  300
TFSTNVYDMP FAPIVGVDNH GKTILFGCAL LKEQTTETFE WLFDTFLIAN DGKMPQTIIT  360
DQDQSMANAL DSRFPMSVRR FRYWHIIKVM KQKQYAFFKA RKGLYREINT THPLFMANLA  420
LTLLIYHAL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J194900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319334.1	1e-163	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1Z5RF97	1e-164	A0A1Z5RF97_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.J29801.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-57	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.J194900.1.p