PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J197500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 294aa MW: 31935.1 Da PI: 9.9915

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J197500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	38	4.6e-12	109	176	4	70
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvk 70 ++ ws+ De +lL + + f++++g p d+ ++++ + +sis ++ + + K++rLK Kf++ Pavir.J197500.1.p 109 KKYWSDADEFTLLAAAVAFRERNGRAPRLpDMAELFDSICDSISPDIDQFMVYYKMKRLKSKFQHSNG 176 678********************88877*******************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.4E-10	109	175	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDADARPSPP RSKKGPSLKS DSDWSPNPSP GGSPSEHKRR RRTSAESAAL ALTAVAARAS 60 AASSDAGRGA VRRSLRSRRR AARVDGDDGG IQMLGDAAAR VGGGRGGVKK YWSDADEFTL 120 LAAAVAFRER NGRAPRLPDM AELFDSICDS ISPDIDQFMV YYKMKRLKSK FQHSNGPSDR 180 RLRNLCSILW GVGVVPSSED DSDAAERRGV PDAAAMMPVV TEVLGEYWKI NERVMAPVPL 240 EKGLSLLGKK EGRFLETKWR QQLDEEMQSQ MRQHDLAKEV CGLLTDAIKG LGP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20969	0.0	callus\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J197500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825361.1	1e-169	uncharacterized protein LOC112900770
Refseq	XP_025825369.1	1e-169	uncharacterized protein LOC112900770
Refseq	XP_025825375.1	1e-169	uncharacterized protein LOC112900770
TrEMBL	A0A3L6RVW5	1e-171	A0A3L6RVW5_PANMI; Uncharacterized protein
STRING	Pavir.J28432.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2682	27	63

Link Out ? help Back to Top
Phytozome	Pavir.J197500.1.p