PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J201600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 147aa    MW: 17025.9 Da    PI: 10.2267
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J201600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.66.5e-1626106191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        +fYn+Y    GFsvrks+ + +     i+k t + sk+ k+e +k+      r++  tr+gC ak+++ +++ +g+w+v+++  eHnH+l+p
  Pavir.J201600.1.p  26 QFYNTYTLGKGFSVRKSYIEWN-----IIKVTVKRSKYVKKEIKKQ------RPQDITRVGCPAKFVIALNRnTGQWYVKNFIDEHNHPLVP 106
                        6****************98887.....8899988888888777654......59****************999****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1326106IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MADLEALLEY NEIVRKMFAN ENEGFQFYNT YTLGKGFSVR KSYIEWNIIK VTVKRSKYVK  60
KEIKKQRPQD ITRVGCPAKF VIALNRNTGQ WYVKNFIDEH NHPLVPADLG CLLHSHRKIS  120
DAQKAEIVEL GVAGIRKHQI FKIMKM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J201600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301886.14e-59protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH82e-50I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.J25409.1.p2e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-15FAR1-related sequence 5