PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J218400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 266aa    MW: 29400.8 Da    PI: 10.6147
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J218400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.11.1e-25120211185
                        EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                        f+kvltp+dv++++rlv+pk++ae+h        +     ++ l ++d +gr+W+++++y+++s+ y+ltk W++Fv+++gL++gD+v F++
  Pavir.J218400.1.p 120 FQKVLTPNDVGNLNRLVVPKQHAEKHlfvkrsplM-AAGMGVLLDVKDGEGRTWRFRYSYCRSSRIYILTKDWRSFVREKGLQAGDTVAFSR 210
                        99************************999888751.3447889***********************************************95 PP

                        - CS
                 B3  85 d 85 
                        +
  Pavir.J218400.1.p 211 S 211
                        4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-30116228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-25118217IPR015300DNA-binding pseudobarrel domain
CDDcd100174.79E-26118211No hitNo description
SMARTSM010199.1E-17120219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943120227IPR003340B3 DNA binding domain
PfamPF023624.2E-23120210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MELGTKIAFA GIDPADQVAA LQLLPPPPRS WRLWGVAPLP NPLHAYGGGH AVSNFTAKDA  60
TNGERLAFQA AAHSTVSETA DMLRLHMSTA GDGARLSPWQ GGRVRLLPPP LLPCAREHLF  120
QKVLTPNDVG NLNRLVVPKQ HAEKHLFVKR SPLMAAGMGV LLDVKDGEGR TWRFRYSYCR  180
SSRIYILTKD WRSFVREKGL QAGDTVAFSR SAIGPFQQMH IDYWKKKQEY VTADDAIAAV  240
NSPVVKLFGV DIARRRSPEL RSSQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-3211722711117DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J218400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828655.11e-139B3 domain-containing protein Os02g0764100-like
SwissprotQ9AWS71e-44Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A368R4V31e-56A0A368R4V3_SETIT; Uncharacterized protein
STRINGPavir.Hb01193.1.p1e-126(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.14e-40RAV family protein