PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J220600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 262aa    MW: 29039.4 Da    PI: 10.6534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J220600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.16.4e-27120211185
                        EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                        f+kvltpsdv++++rlv+pk++ae+h                ++ + ++d +g++W+++++y+ +s+ y+ltkGW++Fv+++gL++gD+v F
  Pavir.J220600.1.p 120 FQKVLTPSDVGNLNRLVVPKQHAEKHlfvkrnplmaA---GVGVLVDVKDGEGKTWRFRYSYCWSSRIYILTKGWRRFVREKGLQAGDTVAF 208
                        99************************99988886443...35789*****************99999************************* PP

                        EE- CS
                 B3  83 kld 85 
                        +++
  Pavir.J220600.1.p 209 SRS 211
                        955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-32116221IPR015300DNA-binding pseudobarrel domain
CDDcd100176.38E-28118211No hitNo description
SuperFamilySSF1019361.16E-26118214IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.395120227IPR003340B3 DNA binding domain
PfamPF023623.2E-24120211IPR003340B3 DNA binding domain
SMARTSM010194.4E-18120218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MELGTKIAFA GIDPADQVAA LQLLPPPPRS WRLWGVAPLP NPLHAYGGGH AVANFTAKHA  60
TNGERLAFQA AAHSTVSETA DMLRLHMSTA GDGARLSPWQ GGRVRQLPPP LLPCAREHLF  120
QKVLTPSDVG NLNRLVVPKQ HAEKHLFVKR NPLMAAGVGV LVDVKDGEGK TWRFRYSYCW  180
SSRIYILTKG WRRFVREKGL QAGDTVAFSR SAMRPYKQMH IDYWRKQEED VTADAIAIDS  240
RVVMLFGVDI GRRGSPERRS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-3311723311124DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J220600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828655.11e-147B3 domain-containing protein Os02g0764100-like
SwissprotQ9AWS75e-45Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A368R4V32e-60A0A368R4V3_SETIT; Uncharacterized protein
STRINGPavir.Hb01193.1.p1e-123(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.17e-40RAV family protein