PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J233700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 369aa MW: 39940.1 Da PI: 4.6193

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J233700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	28	6.1e-09	21	134	28	127
NAM 28 leleevikevdiykvePwdLpk..........kvka...eekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvg 101 ++ +++++vd++++ P dL + + + ++ wyf++ ++ k+a+gk r++ a ++ W++ + k+v+ ++ Pavir.J233700.1.p 21 VDS-TFVHRVDVCSAAPADLVAnlepvpgtnlA--GddgYSSVWYFYCLKRYKNAQGKpsghRQRAiAGGDACWHSETRPKPVKG-LAGATL 108 444.5799**********7447788877441..222234499***9999766555244443344778******98.333444 PP NAM 102 lkktLvfy..kgrapkgektdWvmheyr 127 + L + +g++++ ++ W+m ey Pavir.J233700.1.p 109 C--NLSYGrkEGSSRSFNRLGWCMTEYD 134 4..455543378999999*******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	10.612	1	149	IPR003441	NAC domain
SuperFamily	SSF101941	7.98E-13	16	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MAAADDASSV ALLRGLRSGA VDSTFVHRVD VCSAAPADLV ANLEPVPGTN LAGDDGYSSV 60 WYFYCLKRYK NAQGKPSGHR QRAIAGGDAC WHSETRPKPV KGLAGATLCN LSYGRKEGSS 120 RSFNRLGWCM TEYDEEGGDG HVLCKVYRSS SSLAKGKLKT SSTSTNPTSS EQASSASKRK 180 ATADHPQARP SKISHAQACA TTSSYACVDQ DFYQHVDHQL QEPLLTDDQI TMPVGIDYES 240 LFLAEEEQEQ VQQQNTMVTA EVDQFQQNTL VTTAEEQQLQ LNTMDGLLGD QGYHDYGSCS 300 ANTRFTMDQS LENIQFTMEE LMGGPDHGEY GGCSPNTQFT MDEMFSRCCG PPTAVAPMDA 360 GFFDGLAF*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MAAADDASSV ALLRGLRSGA VDSTFVHRVD VCSAAPADLV ANLEPVPGTN LAGDDGYSSV  60
WYFYCLKRYK NAQGKPSGHR QRAIAGGDAC WHSETRPKPV KGLAGATLCN LSYGRKEGSS  120
RSFNRLGWCM TEYDEEGGDG HVLCKVYRSS SSLAKGKLKT SSTSTNPTSS EQASSASKRK  180
ATADHPQARP SKISHAQACA TTSSYACVDQ DFYQHVDHQL QEPLLTDDQI TMPVGIDYES  240
LFLAEEEQEQ VQQQNTMVTA EVDQFQQNTL VTTAEEQQLQ LNTMDGLLGD QGYHDYGSCS  300
ANTRFTMDQS LENIQFTMEE LMGGPDHGEY GGCSPNTQFT MDEMFSRCCG PPTAVAPMDA  360
GFFDGLAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J233700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2S3IGW5	0.0	A0A2S3IGW5_9POAL; Uncharacterized protein
STRING	Pavir.J34372.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Pavir.J233700.1.p