PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J252700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 208aa    MW: 21786.4 Da    PI: 9.5735
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J252700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1853102255
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr ++ +gr++AeIrd +     r +r++lg+++++ eAa a+++a+ +l+g
  Pavir.J252700.1.p  53 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDSPVEAAMAYDRAAVALRG 102
                        6********.**********88.....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.17E-2752109No hitNo description
PfamPF008475.7E-1253102IPR001471AP2/ERF domain
PROSITE profilePS5103221.56253110IPR001471AP2/ERF domain
SMARTSM003804.9E-3153116IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2153110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-2953109IPR001471AP2/ERF domain
PRINTSPR003673.8E-95465IPR001471AP2/ERF domain
PRINTSPR003673.8E-97692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MQMEWDMRGG GGGGVGDGGG ARAGGLAVGG VVVGGGDQHH HHHPQQQQRV EAHYRGVRKR  60
PWGRYAAEIR DPWRKTRVWL GTYDSPVEAA MAYDRAAVAL RGSKARLNFG GGGGGCGRAR  120
DDAPAAAYHP RARCQLFGGG LDVGRPSPWP HVVCFPPSML HQTAAPPAWQ PLLAADVAAA  180
QPSTALELRT GPPALPFDLN EPPSNGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2053109562ATERF1
3gcc_A9e-2053109562ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J252700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404204e-72BT040420.1 Zea mays full-length cDNA clone ZM_BFc0090F19 mRNA, complete cds.
GenBankEU9735034e-72EU973503.1 Zea mays clone 399837 mRNA sequence.
GenBankKJ7269424e-72KJ726942.1 Zea mays clone pUT3488 AP2-EREBP transcription factor (EREB93) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809088.12e-86ethylene-responsive transcription factor RAP2-1-like
TrEMBLA0A3L6T1I19e-88A0A3L6T1I1_PANMI; AP2-EREBP transcription factor
STRINGPavir.J36215.1.p7e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.19e-29ERF domain protein 12