PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J257700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 162aa MW: 17365.8 Da PI: 10.518

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J257700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.2	3.1e-12	117	153	3	39
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 + k rr+++NReAAr+sR+RKka+i++Le+ L+ Pavir.J257700.1.p 117 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLS 153 67999************************98554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.3E-9	114	160	No hit	No description
SMART	SM00338	0.0069	115	161	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.301	117	162	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-9	118	154	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.16E-7	119	160	No hit	No description
PROSITE pattern	PS00036	0	122	137	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
HSSSHLLLYI FICKYIHGMA CSCCMCGHCA ETLNIFPSQP MHVVEPALPK HQGSMGTNNT 60 TPNAGAGPSS KRPPPAAGGP KDGKTAAVKR EAGSSGGALG SGTPSTSKHQ EGPRTPDAKT 120 LRRLAQNREA ARKSRLRKKA YIQNLETSRI RLSQLEQELH RS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J257700.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368931	5e-31	AK368931.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2082I06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791994.1	8e-63	transcription factor TGAL9-like isoform X3
Swissprot	Q0E342	4e-36	TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBL	A0A3L6RRA8	1e-62	A0A3L6RRA8_PANMI; Transcription factor TGA2-like isoform X2
STRING	Pavir.J27823.1.p	1e-116	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2732	36	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	3e-21	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.J257700.1.p

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]