PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J263200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 95aa    MW: 11203.1 Da    PI: 9.9733
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J263200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.94.5e-154732089
               FAR1 20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                       +k++ +g+it+ +fvC +eg+r ++k+  + ++ ++aetrt+C+ ++++ +++ ++  +vt+l+leHnH+l
  Pavir.J263200.1.p  4 NKRQSDGKITSCKFVCANEGHRLKDKRY-HLTKCPQAETRTDCQVHMNLIMDRkKEILKVTELVLEHNHQL 73
                       566789*******************999.999***************988877799**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-11473IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MYTNKRQSDG KITSCKFVCA NEGHRLKDKR YHLTKCPQAE TRTDCQVHMN LIMDRKKEIL  60
KVTELVLEHN HQLHLPEILH LMVSQRKIFR FTSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J263200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314647.12e-44protein FAR1-RELATED SEQUENCE 5-like
TrEMBLK4A1296e-48K4A129_SETIT; Uncharacterized protein
STRINGSi032571m1e-48(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-08FAR1-related sequence 5