PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J270600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 223aa    MW: 22752.1 Da    PI: 4.4625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J270600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1227661355
                AP2 13 grWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Pavir.J270600.1.p 27 GSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 66
                       89*******9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.556174IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-142675IPR016177DNA-binding domain
SMARTSM003804.7E-212680IPR001471AP2/ERF domain
PfamPF008472.0E-62766IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-222774IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRRRRRGSTA AAAGSGSTRA CACGDGGSWV SEIRAPNQKT RIWLGSYSTA EAAARAYDAA  60
LLCLKGSAAD LNFPVHLPFH IPAAAMSPKS IQRVAAAAAA STGGCSPLQA GAPCYPAAAA  120
TNAATTPPCS YGDASSGASS PETGSGAGQY YETAHDDVDV TGDADLAALA DIEAFFQSPK  180
CMEYALMDPC SSFFASAPMA TDASNEWEEE GEINLWSFSS VN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J270600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770121e-115AK377012.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145K04.
GenBankBT0835321e-115BT083532.1 Zea mays full-length cDNA clone ZM_BFb0008I08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954039.11e-107ethylene-responsive transcription factor ERF014
TrEMBLA0A368PRU61e-105A0A368PRU6_SETIT; Uncharacterized protein
STRINGPavir.J28262.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-20ERF family protein