PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J271500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 502aa    MW: 51976.3 Da    PI: 6.5095
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J271500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-06343365123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp CgksF++   L  H+++H
  Pavir.J271500.1.p 343 HECPTCGKSFPTYQALGGHMSSH 365
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0167294IPR015880Zinc finger, C2H2-like
PfamPF139126.5E-47296IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-87394No hitNo description
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-8338365No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4340367IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002343365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.866343370IPR007087Zinc finger, C2H2
PfamPF139122.4E-12343365IPR007087Zinc finger, C2H2
PROSITE patternPS000280345365IPR007087Zinc finger, C2H2
SMARTSM003550.092435457IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-10435458IPR007087Zinc finger, C2H2
PROSITE profilePS501578.683435457IPR007087Zinc finger, C2H2
PROSITE patternPS000280437457IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MNSRAYQFQL QAAEAAAAVA SPVHAADDDA PEPPTTKALL LELQAQGTAD APPAPRQGSG  60
VAPTGVGNAQ ATKCPECPKW FLSEKAMFGH LRKHPERGYK GATPPGTAVV GDKKPKKQVA  120
RKEADVSAMN MTAAAATAGE KNPWGEAAKL SAKWPVTAKR GRAAAAPSGQ RALEAGMQAS  180
SCCEDEEAAM ILLEMASSSR STTSETQQGS AHQVAHAPDA VSGHQMLDAE QPMLLDHVSG  240
NQAPPEPEQI VQPEVVFELS AESQTPAVKE LTNLEITTEA VLIVVPASKS IAPSPGSKKA  300
KKQSRTAVLD LEQTAASPAP PPEGADGKPA ARRIPSPASD KKHECPTCGK SFPTYQALGG  360
HMSSHVKGKT GARHDDLAAA QAMHNILAHR NQSAVSVVVA GASIGAAAAL DQDLRLQEDV  420
QPPPAPTVAP SAAPHVCTEC HMTFPSGQAL GGHKRKHWFP EKHQAKAAAP AEPAAPAPAP  480
AAWAFDLNEV PEEGEGESDQ P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J271500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008671251.11e-143uncharacterized protein LOC103648579
TrEMBLA0A3L6PZ770.0A0A3L6PZ77_PANMI; Uncharacterized protein
STRINGPavir.J19788.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-13C2H2 family protein