PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J272400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 206aa    MW: 22264.2 Da    PI: 9.1531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J272400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.5e-06167202341
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41 
                        + h  +Er+RR+++ ++f  L +++P +   ++ +  K+
  Pavir.J272400.1.p 167 QDHILAERKRREKLSQRFIALSKIVPGL---KKVRTPKS 202
                        67999*********************99...88888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.51E-7160202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.82164205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-7168201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-5169203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MATQWFSNMV IDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ GEVDQALAAA LMPLQQPAAA  60
AEHRPRKAAK VNTSWDSCIT EQGSPADSSS PTILSFGGHA FAKAETHQLP SAPYCGAPAK  120
APKQEVVDAG ATAFHQERPA KRSYDAMVAE VAKVPAPATT RPASQNQDHI LAERKRREKL  180
SQRFIALSKI VPGLKKVRTP KSMAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERKRRE
2173178RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.105951e-127root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J272400.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365521e-102BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds.
GenBankKJ7268631e-102KJ726863.1 Zea mays clone pUT3404 bHLH transcription factor (bHLH137) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795190.11e-129transcription factor bHLH18-like
TrEMBLA0A2S3III01e-128A0A2S3III0_9POAL; Uncharacterized protein
STRINGPavir.J35103.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.22e-13bHLH family protein