PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J283600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 341aa    MW: 37265.6 Da    PI: 6.5268
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J283600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.31.4e-40822131127
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                        l+pGfrF Pt+eelv++yL++k++g +  ++e+vi+ +d++ ++Pw+Lp+    +++++ + w++F++r++++a+g r++r+t sgyWka g
  Pavir.J283600.1.p  82 LAPGFRFYPTEEELVCFYLRNKLDGVRqGDIERVIPVADVCALDPWQLPEahrdAFSGGVEPWFYFCPRQEREARGGRPSRTTPSGYWKAAG 173
                        579*********************9885677788**************9545665566889******************************* PP

                NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        +   v++++g+ +g+kkt+vfy+gr p g kt+W ++ey+
  Pavir.J283600.1.p 174 TPGLVYAADGRPIGTKKTMVFYRGRPPAGAKTKWKLNEYK 213
                        ***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-4576246IPR003441NAC domain
PROSITE profilePS5100545.95582246IPR003441NAC domain
PfamPF023655.6E-2284213IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MQPPLSVFQS TRGKILRNQA RSVRSIAMST LANDNAHPAC AVLYNPDATY LRVLTQFLES  60
PEPPRPPRRA KRDHSAMADD ELAPGFRFYP TEEELVCFYL RNKLDGVRQG DIERVIPVAD  120
VCALDPWQLP EAHRDAFSGG VEPWFYFCPR QEREARGGRP SRTTPSGYWK AAGTPGLVYA  180
ADGRPIGTKK TMVFYRGRPP AGAKTKWKLN EYKALEVQDE DAAGVPAPSH ALQTRSEFTV  240
CRLYTKSGCP RQFDRRPGTA AAAAAGGGSE NPTAAAASAS GEEMGRKRKR AAPSDDDTPS  300
SDGDGDGDGS TQQLLGQRGT DEGLNDDMAY WLEILDNDWL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-298224617165NO APICAL MERISTEM PROTEIN
1ut4_B3e-298224617165NO APICAL MERISTEM PROTEIN
1ut7_A3e-298224617165NO APICAL MERISTEM PROTEIN
1ut7_B3e-298224617165NO APICAL MERISTEM PROTEIN
3swm_A3e-298224620168NAC domain-containing protein 19
3swm_B3e-298224620168NAC domain-containing protein 19
3swm_C3e-298224620168NAC domain-containing protein 19
3swm_D3e-298224620168NAC domain-containing protein 19
3swp_A3e-298224620168NAC domain-containing protein 19
3swp_B3e-298224620168NAC domain-containing protein 19
3swp_C3e-298224620168NAC domain-containing protein 19
3swp_D3e-298224620168NAC domain-containing protein 19
4dul_A3e-298224617165NAC domain-containing protein 19
4dul_B3e-298224617165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290GRKRKRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J283600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0936261e-139FP093626.1 Phyllostachys edulis cDNA clone: bphylf060a06, full insert sequence.
GenBankFP0990841e-139FP099084.1 Phyllostachys edulis cDNA clone: bphyem111h11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809342.11e-154NAC domain-containing protein 90-like
SwissprotQ9FMR31e-63NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2S3HBL81e-153A0A2S3HBL8_9POAL; Uncharacterized protein
STRINGPavir.J36282.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.19e-66NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]