PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J285300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 125aa MW: 13432.4 Da PI: 7.3451

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J285300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32	2.3e-10	37	79	42	86
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++sW v+++ + + l+ GW++Fv an+L+ gD vF+l+ Pavir.J285300.1.p 37 GNQSWAVTYC--GELKCKKLGPGWRDFVVANRLRIGDAYVFELIT 79 4699***5..5554456*********************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.616	1	103	IPR003340	B3 DNA binding domain
CDD	cd10017	7.28E-11	9	101	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.1E-11	11	101	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.53E-9	13	84	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.9E-7	37	79	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MQFTQLNAVA YSCALEIPSR LHSHLPGSRV PAVLLFGNQS WAVTYCGELK CKKLGPGWRD 60 FVVANRLRIG DAYVFELITP AAGGTGSEGD GKVVFRVQVL RGDLLEEITS RGATSQDPIV 120 IVDN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J285300.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811196.1	1e-47	B3 domain-containing protein Os06g0112300-like isoform X1
Refseq	XP_025811197.1	8e-48	B3 domain-containing protein Os06g0112300-like isoform X2
Refseq	XP_025811198.1	8e-48	B3 domain-containing protein Os06g0112300-like isoform X2
Swissprot	Q9LHY9	3e-25	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A3L6RQW6	4e-64	A0A3L6RQW6_PANMI; B3 domain-containing protein
STRING	Pavir.J32668.1.p	3e-74	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Link Out ? help Back to Top
Phytozome	Pavir.J285300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]