PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J288400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 150aa    MW: 15330.6 Da    PI: 10.2954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J288400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-053351854
                       HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         ++eL +llP +     ++  Ka iLe+A+ Y+  L
  Pavir.J288400.1.p  3 RLYAELGSLLPDL----PPRAPKARILEEAIAYVGTL 35
                       5799********6....389*************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.794135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-4136No hitNo description
SuperFamilySSF474591.14E-6244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-5544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021168.74E-487136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MSRLYAELGS LLPDLPPRAP KARILEEAIA YVGTLRSTVA KLEAHGGVAE GAGRRTAADG  60
GGAVAADEVL AVEKASCFAA RLPAARRPGA LTRVLEVFRR HGVPVLAATV TSNAGEAAVT  120
VTTGAVALEP ALDTLRFFTL SRTDGGGRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J288400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818588.16e-57uncharacterized protein LOC112894950
TrEMBLA0A2T7DLK49e-56A0A2T7DLK4_9POAL; Uncharacterized protein
STRINGPavir.Ea01658.1.p4e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-07bHLH family protein