PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J316300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 233aa    MW: 24892.2 Da    PI: 11.0414
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J316300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.3e-113075146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       +g+W +eEd  l++ v+ +G+ +W++I ++  + Rt+k+c++rw +
  Pavir.J316300.1.p 30 KGPWMAEEDAVLLEHVRAHGPCDWSSIRSKGLLPRTGKSCRLRWVN 75
                       79*************************8876677**********87 PP
2Myb_DNA-binding43.38.5e-1486126345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w 
  Pavir.J316300.1.p  86 KFSAEEERVVLELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 126
                        79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3162577IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-182778IPR009057Homeodomain-like
SuperFamilySSF466892.43E-2628125IPR009057Homeodomain-like
SMARTSM007173.9E-92979IPR001005SANT/Myb domain
CDDcd001671.36E-103277No hitNo description
PfamPF139214.7E-103383No hitNo description
PROSITE profilePS5129420.25278133IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-1879131IPR009057Homeodomain-like
SMARTSM007175.2E-1283131IPR001005SANT/Myb domain
CDDcd001673.77E-1186125No hitNo description
PfamPF002494.7E-1286126IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MARAPGGGRR RGGGGSRRRD AAGGGDAVRK GPWMAEEDAV LLEHVRAHGP CDWSSIRSKG  60
LLPRTGKSCR LRWVNKLRPN LKTGCKFSAE EERVVLELQA QFGNKWARIA TYLPGRTDND  120
VKNFWSTRQK RLARLLRAPL PARCTSRNTS AAASKAPAAA ASSLESRPAT VGPCLDRVPF  180
GSSSSGVHPC SAATPFMDAR NAALVPYDQS ASGLLSFNGA LPPFAPGTDS HEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-262813125126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614GGRRRGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J316300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630006e-53AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316136e-53AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149606e-53AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126126e-53CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552186e-53CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824013.11e-126probable transcription factor MYB58
SwissprotQ0JB891e-81MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A2S3I9S81e-125A0A2S3I9S8_9POAL; Uncharacterized protein
STRINGPavir.J30013.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-58MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]