PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J334900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 335aa    MW: 35217.4 Da    PI: 6.8829
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J334900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.8e-28130190259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        dDg++WrKYGqK++ g+++pr+YYrCt++   +Cp++k+v+r+++dp++++++Y+g+H+++
  Pavir.J334900.1.p 130 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqNCPATKQVQRTDDDPNLFDVVYHGDHTCR 190
                        8***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-29118190IPR003657WRKY domain
PROSITE profilePS5081121.666124187IPR003657WRKY domain
SuperFamilySSF1182907.19E-26127190IPR003657WRKY domain
SMARTSM007743.7E-40129191IPR003657WRKY domain
PfamPF031064.1E-27130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAEGGESGGR ARLVSELVRV QDLVHRLELQ LRAPADAASV DLCRQLIHQI VALTDRSIGM  60
ARCSPDLAAA AQQLQQQPLS GAPSPLSDSG SDQHQPFLRA SNKKRKATAR WTSQQVRVSA  120
AGAGAEGPAD DGHSWRKYGQ KDILGAKHPR AYYRCTHRNS QNCPATKQVQ RTDDDPNLFD  180
VVYHGDHTCR PSAAPTTRRA PHNPHAQAAL QGLAARLTVT TDAAIAAAAI AAAAALPPMT  240
PDTCPARGAS SPWSLASPVG SDSNGCAQGV SPCPMPGYAD WGSHGDLQEV VSACAAVSDL  300
QGLPALDSDL MPLECFVFDQ SFDMGGAMPS LFYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22130190969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105LRASNKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.21591e-173root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J334900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586270.0KU058627.1 UNVERIFIED: Panicum miliaceum WRKY14-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820899.10.0probable WRKY transcription factor 41
TrEMBLA0A2S3I2580.0A0A2S3I258_9POAL; Uncharacterized protein
STRINGPavir.J37854.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-28WRKY family protein