PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J339500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 125aa    MW: 13870.7 Da    PI: 5.4816
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J339500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind78.31.2e-243896260
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
       HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                       Fl+k++++++d+ +++++sw e+g +fvv+ + ef++++Lp+yFkh+nf+SFvRQLn+Y
  Pavir.J339500.1.p 38 FLTKTFQLVDDPCTDHVVSWGEDGATFVVWRPPEFSRDLLPNYFKHNNFSSFVRQLNTY 96
                       9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-272897IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-2334110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-223796IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.0E-213896IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-153861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-157688IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1589101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAFLVERCGS GGGEMAVSMD VETSSQSHAA KPVVPAPFLT KTFQLVDDPC TDHVVSWGED  60
GATFVVWRPP EFSRDLLPNY FKHNNFSSFV RQLNTYVSDW LRVCVHVRAS ALDLHCTFIF  120
LTAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-18111124100Heat shock factor protein 1
5d5v_B8e-18111124100Heat shock factor protein 1
5d5v_D8e-18111124100Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J339500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432491e-111AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797236.13e-55heat stress transcription factor B-4d-like
SwissprotQ7XHZ01e-44HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A2T7CC945e-54A0A2T7CC94_9POAL; Uncharacterized protein
STRINGPavir.Ib01755.1.p3e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-38heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]