PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J349300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 126aa MW: 12873.5 Da PI: 9.8414

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J349300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	63.6	3.6e-20	4	36	28	60
zf-Dof 28 qPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 Pr+fC+aC+ryWt+GGa+rnvPvG+grrkn+ Pavir.J349300.1.p 4 NPRHFCRACHRYWTAGGAIRNVPVGSGRRKNRP 36 6*****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	16.6	1	36	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-15	3	35	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-11	3	35	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MGDNPRHFCR ACHRYWTAGG AIRNVPVGSG RRKNRPVPLP PPPAPAPHAG DATGTPTSAD 60 HVSESGSPPV FTTASVGLAV PYRGSPFHLA PSPACTAAGL PETAGQYWWL VAGGAARAVA 120 PDRAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J349300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU955011	2e-48	EU955011.1 Zea mays clone 1501573 hypothetical protein mRNA, complete cds.
GenBank	KJ726995	2e-48	KJ726995.1 Zea mays clone pUT3967 C2C2-DOF transcription factor (DOF10) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809286.1	6e-58	dof zinc finger protein 5-like
TrEMBL	A0A3L6RC51	7e-57	A0A3L6RC51_PANMI; Dof zinc finger protein DOF5.1-like
STRING	Pavir.J38170.1.p	6e-80	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	4e-15	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.J349300.1.p