PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J350400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 140aa    MW: 14988.4 Da    PI: 7.3885
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J350400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-1154964286
                       TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                        ++sW v+++  +  +   l+ GW++Fv an+L+ gD +vF+l+ 
  Pavir.J350400.1.p 54 GNQSWAVTYC--GELKCKKLGPGWRDFVVANRLRIGDACVFELIT 96
                       5699*****5..5554456***********************874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-13795IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-12895IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-1311116No hitNo description
PfamPF023622.2E-85496IPR003340B3 DNA binding domain
PROSITE profilePS5086310.29255118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MQIVPLSGDK PFFTIVLSKG HVEKPAQLVC IEEIPSRLHS HLPGSRVPAV LLLGNQSWAV  60
TYCGELKCKK LGPGWRDFVV ANRLRIGDAC VFELITPVAG GTGSEGDGKV VFRVLRGDLP  120
EEITSRGATS QDPIVIVDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J350400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811196.17e-58B3 domain-containing protein Os06g0112300-like isoform X1
RefseqXP_025811197.17e-58B3 domain-containing protein Os06g0112300-like isoform X2
RefseqXP_025811198.17e-58B3 domain-containing protein Os06g0112300-like isoform X2
TrEMBLA0A3L6RQW62e-60A0A3L6RQW6_PANMI; B3 domain-containing protein
STRINGPavir.J26351.1.p5e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-07related to vernalization1 1