PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J364200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 172aa    MW: 17596.9 Da    PI: 7.4455
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J364200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-113679447
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47
                        +r++r+ +NRe+ArrsR RK+  ++ L+  ++ L  eN   + 
  Pavir.J364200.1.p 36 QRRAKRMLSNRESARRSRMRKQRHLDDLTAQAAHLRRENAHVAT 79
                       689************************************87664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-153397IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.5533577IPR004827Basic-leucine zipper domain
PfamPF001701.1E-93678IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.29E-103786No hitNo description
Gene3DG3DSA:1.20.5.1706.4E-937109No hitNo description
CDDcd147021.45E-153886No hitNo description
PROSITE patternPS0003604055IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MASSSGSGSS GSLSAATAAL AAAAGTEEEL RALMEQRRAK RMLSNRESAR RSRMRKQRHL  60
DDLTAQAAHL RRENAHVATA LGLTTQGLLA VDAENAVLRT QAAELAARLA SLNDILACMN  120
TNAAAAAGAV AVSLTAAAAA VSASSDPYLA FDGATALDDL LRSCPEMFPL C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14956RRSRMRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J364200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673561e-175BT067356.2 Zea mays full-length cDNA clone ZM_BFc0022C11 mRNA, complete cds.
GenBankBT0853011e-175BT085301.2 Zea mays full-length cDNA clone ZM_BFb0368K21 mRNA, complete cds.
GenBankBT0853531e-175BT085353.2 Zea mays full-length cDNA clone ZM_BFc0002B07 mRNA, complete cds.
GenBankHQ8587961e-175HQ858796.1 Zea mays clone UT1860 bZIP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797450.11e-114bZIP transcription factor 11-like
SwissprotC0Z2L57e-34BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A2T8KTR21e-113A0A2T8KTR2_9POAL; Uncharacterized protein
STRINGSb04g002700.19e-76(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.11e-27G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]