PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J367500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 180aa    MW: 19536.3 Da    PI: 12.1238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J367500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.4e-1353101456
                AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        +GVr +k +grW+AeIr+p++   r + ++g+fg+   Aa a++aa  +++ge
  Pavir.J367500.1.p  53 TGVRPRK-SGRWAAEIRVPTT---REKLWIGTFGSDRLAALAYDAAVFCFYGE 101
                        69*9777.8*********976...49*********99**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-1951112IPR001471AP2/ERF domain
PROSITE profilePS5103217.96551112IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1351112IPR016177DNA-binding domain
SMARTSM003801.7E-1851118IPR001471AP2/ERF domain
CDDcd000186.05E-1654114No hitNo description
PfamPF008474.2E-854100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAALATNGGG AAWSRGGGGQ PGVSFGRQKR SEWTGVRPRK PRRPAGQKRS EWTGVRPRKS  60
GRWAAEIRVP TTREKLWIGT FGSDRLAALA YDAAVFCFYG EDLPKTRRFN FPVAPRPDVP  120
KILRGHLSVA SVKSIAPSIM PAPSTPSSRR SGGAGGGGRG WSSCRRYYCF IPWRPDRHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J367500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276822e-40KJ727682.1 Zea mays clone pUT5610 AP2-EREBP transcription factor (EREB108) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822464.12e-64ethylene-responsive transcription factor ERF011-like
TrEMBLA0A2S3I3Y85e-63A0A2S3I3Y8_9POAL; Uncharacterized protein
STRINGPavir.J31711.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.14e-17ERF family protein