PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J369800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 190aa    MW: 21662.5 Da    PI: 9.8124
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J369800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.23.8e-152072557
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       t+ +++q++ Le+++   +yp+ ee+ + A+ +gLt +qV++WF+ rR ke++
  Pavir.J369800.1.p 20 TKKSPQQIQMLEKFYSDVQYPKPEEMGQYATCVGLTYNQVRIWFKERRRKERR 72
                       66799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-151173IPR009057Homeodomain-like
PROSITE profilePS5007114.7221373IPR001356Homeobox domain
SMARTSM003896.7E-141577IPR001356Homeobox domain
SuperFamilySSF466892.01E-141678IPR009057Homeodomain-like
CDDcd000862.50E-82063No hitNo description
PfamPF000461.9E-122072IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MPPAQMMTNS LGAKRENAGT KKSPQQIQML EKFYSDVQYP KPEEMGQYAT CVGLTYNQVR  60
IWFKERRRKE RREMEAIRSH MERQLSAQSS GPRSSSSSSS CDQDPMYGTS CSRPEFGSRS  120
TSIVGEESTV LSQILFPKDY ILRKIFRKDG PPLGSEFDPL PQSERDCIRD TTCHHSSQNQ  180
RAVKKRKVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16572RRRKERRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J369800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793780.11e-104homeobox-DDT domain protein RLT3 isoform X2
TrEMBLA0A3L6SA751e-104A0A3L6SA75_PANMI; Uncharacterized protein
STRINGPavir.J13571.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.12e-21Homeodomain-like transcriptional regulator