PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J375600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 283aa MW: 29798.5 Da PI: 8.3561

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J375600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.4	5.8e-23	20	66	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ Pavir.J375600.1.p 20 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 66 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.529	3	88	IPR003035	RWP-RK domain
Pfam	PF02042	4.4E-21	21	66	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MASNAPAPQP QALPKPTRVS LSYEEISKLF SLPIAEAASI LGVCTSVLKR ICRSHGIVRW 60 PYRKLVSGKA GDDTKGPERE KAKELLELSK IAKQKAFSPS GSSVASTNTS QGVAKSQQGS 120 SKAGQVSVSP PAVKQNASVS LAHGSQAKAI PSYMDDFKYG FPSSGLSCET KKWWGGSSDS 180 DCAPTKDGSC EALGEASKGM TDDDELDWGA DEAEAEADGA VTAEASAQLC SLRRKAVDDG 240 RKLLNGDTRR GQDFSRLNKR QKLALAQVFG ASLPDVVLVF SE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.16663	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J375600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793833.1	0.0	protein NLP7-like
TrEMBL	A0A2T8I122	0.0	A0A2T8I122_9POAL; Uncharacterized protein
STRING	Pavir.J04809.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pavir.J375600.1.p