PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J391300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 198aa    MW: 20880.8 Da    PI: 11.3394
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J391300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.34.1e-2368157186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +Wt++e+laLiea+r+++e+lr+g+l++++W++v++++        +   +s +qC++k+e+l+kry++++ ++ +r+++   ++p+f  l+
  Pavir.J391300.1.p  68 CWTHEETLALIEAYRDRWEALRKGNLRAADWDDVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLLH 157
                        8*************************************998888788899*************************98443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2267158No hitNo description
SMARTSM005952.0E-576160IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MRRPCHHAPS GLRPSSPLPP SSRPHPSAAR REAAPVAAAA AAAAAAASSM GGMGLGAGAS  60
GRRLPPPCWT HEETLALIEA YRDRWEALRK GNLRAADWDD VANAVTARCG RFPTATPKSG  120
VQCRHKIEKL RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP  180
VPPASTPSPV SSPSSEEA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.70070.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J391300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9599370.0EU959937.1 Zea mays clone 220734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798156.11e-115trihelix transcription factor ASIL1
TrEMBLA0A2T7C9Q51e-113A0A2T7C9Q5_9POAL; Uncharacterized protein
TrEMBLA0A2T8I3U91e-113A0A2T8I3U9_9POAL; Uncharacterized protein
STRINGPavir.J32396.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-26Trihelix family protein