PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J443800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 245aa    MW: 24755.8 Da    PI: 7.698
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J443800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.32.2e-15187229345
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        +++r++r++kNRe+A rsR+RK+a+i+eLe  v +Le+ N +L
  Pavir.J443800.2.p 187 AVQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEANAEL 229
                        689*************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-8185243IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.864187229IPR004827Basic-leucine zipper domain
PfamPF001704.4E-14187230IPR004827Basic-leucine zipper domain
CDDcd147076.25E-20189231No hitNo description
SuperFamilySSF579592.81E-11189231No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-14190231No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MASSRVMPSS SPSHTASDLA RFAQAASRPG GGGGSGLGSM NIEEFLRGIY GDMPTPATPA  60
PAAGRPMPQA PPSAPGIAAR KTAEEVWKEI TTGGGSAGTA APVPQAVVPA GAGGGASAGG  120
PEMTLEDFLA REGAVKEDDV RISGPSAPAE GQVVMGFLGG AEGVGVAGGG GGRGRKRQLM  180
DPVDRAAVQR QKRMIKNRES AARSRERKQA YIAELESLVT QLEEANAELL RGQVILSSDT  240
FHGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.111898e-96callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J443800.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816287.11e-103bZIP transcription factor 12
SwissprotQ0JHF11e-75BZP12_ORYSJ; bZIP transcription factor 12
TrEMBLA0A2S3HPN11e-101A0A2S3HPN1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DE021e-101A0A2T7DE02_9POAL; Uncharacterized protein
STRINGPavir.J05659.1.p1e-161(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.14e-21G-box binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]