PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J452700.1.p
Common NameSWN1
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 408aa    MW: 43438.5 Da    PI: 7.1198
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J452700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.3e-52111401129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wyfFs++dkky+tg+r+nrat++g+Wkatg+d
  Pavir.J452700.1.p  11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 101
                        69****************************.9***************952444443456********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k++++ + + +g++ktLvfykgrap+g+k+dW+mheyrle
  Pavir.J452700.1.p 102 KAIHT-SARRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLE 140
                        ****9.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-567187IPR003441NAC domain
PROSITE profilePS5100555.6611187IPR003441NAC domain
PfamPF023653.5E-2812139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQEKC  60
RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIHTSARR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLE LDDAAHPATA AGDPYYPSPP PSAAIRAGDQ AAAQEQEGWV  180
ICRVFKKKNL LHHGQSSGGG GATASATDGA HAAASKMAAP MEGSPSNCSS VTVSDHAKAP  240
QVLHHSASDD ALDHILQYMG TCRLCSSSKH HQADTKPALL DHHHLAATTT AAACHGSSLY  300
GRFMKLPPLE HAGGGGALLP SPGEYGPADA SGIADWDTLD RLAASYELNG LSDASKTMAA  360
FFDDPTGTAG AAAFSAAAHA TVAGDGDLWS LARSVSSSLH ADLMNNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-471118915170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.41791e-171callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J452700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750800.0KT075080.1 Panicum virgatum secondary wall NAC master switch (SWN1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810838.10.0NAC domain-containing protein 43-like
TrEMBLA0A0K1TPW40.0A0A0K1TPW4_PANVG; Secondary wall NAC master switch
STRINGPavir.J07835.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-84NAC family protein
Publications ? help Back to Top
  1. Zhong R, et al.
    Functional Characterization of NAC and MYB Transcription Factors Involved in Regulation of Biomass Production in Switchgrass (Panicum virgatum).
    PLoS ONE, 2015. 10(8): p. e0134611
    [PMID:26248336]