PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J455500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 183aa MW: 20914.1 Da PI: 10.3754

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J455500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.7	7.2e-22	27	106	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA +vGF++rks kk+ ++g+i++++ vCs +g+++++++k ++trtgC+a+++ + +++g+w v+k++l+HnH la Pavir.J455500.1.p 27 MYNTYAGKVGFNIRKSDVKKR-EDGTIYNKHIVCSSQGYPKNKSSK--------TTTRTGCNARVQFSISREGVWTVQKVVLNHNHYLA 106 8*************98886.9999**********998766........99****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-18	27	106	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
VADKVTQTPI IPKVGMSFES EKAAWTMYNT YAGKVGFNIR KSDVKKREDG TIYNKHIVCS 60 SQGYPKNKSS KTTTRTGCNA RVQFSISREG VWTVQKVVLN HNHYLASPNK RQKLRSQRSV 120 EEADMKLIGQ MMEGGMKPAQ VYEFMIGRQR KKYLEANDAQ TLLEYLKNKQ IEDPSFFMPF 180 KM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J455500.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971460.1	2e-86	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_012703729.1	2e-83	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	T1MNQ5	4e-84	T1MNQ5_TRIUA; Uncharacterized protein
STRING	Sb10g007195.1	2e-82	(Sorghum bicolor)
STRING	TRIUR3_19482-P1	6e-85	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-23	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.J455500.1.p