PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J467400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 211aa    MW: 22922.9 Da    PI: 9.8798
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J467400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.47.6e-3155111158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep++VNaKQy++Il+RRq+Rakle+++kl  k+rk ylheSRh+hA++R Rg+gG F
  Pavir.J467400.1.p  55 EEPIFVNAKQYRAILRRRQMRAKLEAQNKL-VKGRKLYLHESRHRHAMKRVRGPGGPF 111
                        69****************************.*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.6E-3353114IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.77754114IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.9E-2656111IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-215779IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068605979IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.2E-2188111IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLHLPTTVFQ ACASYTADTY YCGVLTGYTS NAIVHPQING AANSRVPLPI EPAAEEPIFV  60
NAKQYRAILR RRQMRAKLEA QNKLVKGRKL YLHESRHRHA MKRVRGPGGP FLNRKELQEQ  120
QGQEALPSLQ TPTGGVGKMA LCRNLCPENS ASHSPSTSSG TSSVSNGGGM VTHQEHISFS  180
SSDFLPSMNF HAENGNEKIA VNGVRHCTPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-2155116263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195104RHRHAMKRVR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.160251e-44callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J467400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797222.11e-108nuclear transcription factor Y subunit A-3-like isoform X3
RefseqXP_025797223.11e-108nuclear transcription factor Y subunit A-3-like isoform X3
TrEMBLA0A3L6TG481e-111A0A3L6TG48_PANMI; Nuclear transcription factor Y subunit A-4-like isoform X1
STRINGPavir.J06649.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.16e-32nuclear factor Y, subunit A6