PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J467400.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 138aa    MW: 14860.7 Da    PI: 10.4085
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J467400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA55.61.8e-171382058
          CBFB_NFYA 20 kRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                       +Rakle+++kl  k+rk ylheSRh+hA++R Rg+gG F
  Pavir.J467400.3.p  1 MRAKLEAQNKL-VKGRKLYLHESRHRHAMKRVRGPGGPF 38
                       5**********.*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.9E-9141IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115223.625141IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.9E-14138IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MRAKLEAQNK LVKGRKLYLH ESRHRHAMKR VRGPGGPFLN RKELQEQQGQ EALPSLQTPT  60
GGVGKMALCR NLCPENSASH SPSTSSGTSS VSNGGGMVTH QEHISFSSSD FLPSMNFHAE  120
NGNEKIAVNG VRHCTPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12231RHRHAMKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J467400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984044.19e-63nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_004984045.19e-63nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_004984046.19e-63nuclear transcription factor Y subunit A-4 isoform X2
TrEMBLA0A3L6TG481e-62A0A3L6TG48_PANMI; Nuclear transcription factor Y subunit A-4-like isoform X1
STRINGPavir.J06649.1.p2e-96(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.49e-18nuclear factor Y, subunit A8