PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J467400.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 181aa    MW: 19724.3 Da    PI: 10.7351
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J467400.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.85.6e-312581158
          CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                       +ep++VNaKQy++Il+RRq+Rakle+++kl  k+rk ylheSRh+hA++R Rg+gG F
  Pavir.J467400.5.p 25 EEPIFVNAKQYRAILRRRQMRAKLEAQNKL-VKGRKLYLHESRHRHAMKRVRGPGGPF 81
                       69****************************.*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.6E-332384IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.7772484IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.9E-262681IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-212749IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068602949IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.7E-215881IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTQVHPQING AANSRVPLPI EPAAEEPIFV NAKQYRAILR RRQMRAKLEA QNKLVKGRKL  60
YLHESRHRHA MKRVRGPGGP FLNRKELQEQ QGQEALPSLQ TPTGGVGKMA LCRNLCPENS  120
ASHSPSTSSG TSSVSNGGGM VTHQEHISFS SSDFLPSMNF HAENGNEKIA VNGVRHCTPS  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-212586263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16574RHRHAMKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J467400.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984044.13e-91nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_004984045.13e-91nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLA0A3L6TG487e-93A0A3L6TG48_PANMI; Nuclear transcription factor Y subunit A-4-like isoform X1
STRINGPavir.J06649.1.p1e-128(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-31nuclear factor Y, subunit A6