PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J470600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 596aa    MW: 64017.6 Da    PI: 8.5109
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J470600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.9e-103684051954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Pavir.J470600.1.p 368 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 405
                        554458******************************88 PP
2BELL86.82.4e-28234303372
               BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +e q kk++L+s++eeV+krY+ y++q+qtvi+s e+vag  +a+p++++Al+a+++hF+cLk +i +q+
  Pavir.J470600.1.p 234 AEQQWKKTRLISMMEEVCKRYRLYYQQVQTVINSSETVAGFSNAAPFAAMALRAMAKHFKCLKGMILSQL 303
                        5899**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-35167301IPR006563POX domain
PfamPF075266.9E-34172299IPR006563POX domain
PROSITE profilePS5007112.26346409IPR001356Homeobox domain
CDDcd000862.88E-13349410No hitNo description
SMARTSM003891.5E-10349413IPR001356Homeobox domain
SuperFamilySSF466895.56E-17351417IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-28352413IPR009057Homeodomain-like
PfamPF059206.3E-19366405IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MSSAAGGYGG GTGSGAEPHC HGHGHGHGDF LLHHHAQHVA AAQQLYHVPQ HSRREKLRYP  60
QDDGSPPHAP APAPHQHWPP PPPPPGFYSY ASSSTSSYSP HSPKGLPHVA AHGHGPAPPL  120
AAQIPTQNFA LSLSSSSNPP PPVPQQQQQP RRPHPHGAPA GPFGPFTGYA AVLGRSRFLA  180
PAEKLLEEIC DVGRAAPHVD RTASDEALLD ADPMEGIDHD MDGAASDAGP ISGAEQQWKK  240
TRLISMMEEV CKRYRLYYQQ VQTVINSSET VAGFSNAAPF AAMALRAMAK HFKCLKGMIL  300
SQLRNTSKAA AGKEGLSKDI AMFGLASGSA AVLQRAGSVA AFGQPHNIWR PQRGLPERAV  360
SVLRSWLFEH FLHPYPTDGD KQMLAKQTGL TRNQVSNWFI NARVRLWKPM VEEIHNLEMR  420
QVQKHPALDK SQLSMHHQTQ HSSESSRKPS DPSDSQLGQS SSITRNHGIP TSQGFPDELS  480
QMSHSIQQGQ VTFAYNGLST PQHQHSLASS QHHQQVGSMS GIGGAGNGGV SLTLGLHQNN  540
RVCIAEPLPA SLPPNLAHRF GLEEVSDAYV MGSFGGQDRH FGKAIGGHLL HDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16355413563Homeobox protein Meis2
3k2a_B5e-16355413563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.208170.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J470600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970574.10.0BEL1-like homeodomain protein 9
TrEMBLK3XFT40.0K3XFT4_SETIT; Uncharacterized protein
STRINGPavir.J04807.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.14e-63BEL1-like homeodomain 8