PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J471700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 225aa MW: 22771.1 Da PI: 8.7297

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J471700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	95.2	5e-30	1	46	18	63
zf-Dof 18 fCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 fCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+sss Pavir.J471700.1.p 1 FCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSSS 46 9*****************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	24.036	1	43	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-24	1	43	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-19	1	39	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
FCYYNNYNLS QPRHFCKSCR RYWTKGGVLR NVPVGGGCRK AKRSSSSSSS SASSRPSTPT 60 SAADAKNPRR ASASSPRSNS GSGSASPTAA ATPAPTPTPT TPSSNNAASL TSHHANPFST 120 VDVAPPAPIF ADQAAALASL FAPPPLPVFT FAAQPKEESA AASAMQLAGQ AAPSEAPSSA 180 AADMGAFASL DASGMFDLGD ASAAAYWSAG SCWTDVQDPS MYLP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7271	0.0	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in germinating seeds up to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J471700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:11470159}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243257	0.0	AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822624.1	1e-103	dof zinc finger protein 4-like
Swissprot	Q6Z345	2e-60	DOF4_ORYSJ; Dof zinc finger protein 4
TrEMBL	A0A2S3GST5	1e-102	A0A2S3GST5_9POAL; Uncharacterized protein
STRING	Pavir.J13498.1.p	1e-156	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	8e-24	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Pavir.J471700.1.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]