PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J474800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 407aa    MW: 44984.4 Da    PI: 6.4474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J474800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232e-07155178123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        y+Cp Cg++F+++ +L+rH r  H
  Pavir.J474800.1.p 155 YSCPVCGRRFPTRPDLTRHFRQlH 178
                        99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-5153181No hitNo description
Gene3DG3DSA:3.30.160.603.8E-5154179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.339155183IPR007087Zinc finger, C2H2
SMARTSM003552.2E-5155178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157178IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10102.1E-4206304IPR029060PIN domain-like
CDDcd061671.31E-8221305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MPLALPFLHL PPNPAPFYPS RIQRTQQSHP HLSLRTRRPS AAAAAAAAAE AGNPSASVDV  60
DVEMVRGRDG VWTARSPTVV VLWDLDNKPP RGAPFPAATS LIAAASLLGR VVSISAFANR  120
HAFSHLPAWV AAERRDRRAL DRAERAGLAA PSVPYSCPVC GRRFPTRPDL TRHFRQLHER  180
ERNKKLSRLR SLKGKKRQKF RERFITGNTK YEDAARELLT PKVGYGLASE LRRAGVHVRT  240
VSDKPQAADH ALKRQVKHSV AYGVDWMVLV SDDSDFTDTV RNAHAADLRT VVVGDACRAL  300
GKVADIWLPW DRVENGEVDE EMLRSCTLPG YGEDQEDDRG EEFRLDWDTS DLDDVIDDIV  360
GRTSLVGATT ISAFADEDVT DGIFGVELNG DSMFWSSDDE EEDGYL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.417770.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J474800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9677610.0EU967761.1 Zea mays clone 305881 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810356.10.0uncharacterized protein LOC112888367
TrEMBLA0A3L6P9W30.0A0A3L6P9W3_PANMI; Uncharacterized protein
STRINGPavir.J33131.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.12e-91C2H2-like zinc finger protein