PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J474900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 130aa    MW: 14052.8 Da    PI: 10.3841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J474900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.53.9e-142441055
                AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +k+g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  Pavir.J474900.1.p  2 RKWGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 44
                       46**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-26153IPR001471AP2/ERF domain
SMARTSM003801.1E-28158IPR001471AP2/ERF domain
CDDcd000183.72E-22154No hitNo description
PROSITE profilePS5103219.572152IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-18254IPR016177DNA-binding domain
PfamPF008474.6E-8244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYSTAVA AARAYDTAVF YLRGRSARLN FPDQLDGAAV  60
AERPEGHKDG GAGLTAAAIR KKAAEVGARV DALHCGGVAH PPPPLSSHRR RAKNPDLNRE  120
PTPDTSDDE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.41731e-138leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J474900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556825e-92EU955682.1 Zea mays clone 1542257 dehydration responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813567.17e-77ethylene-responsive transcription factor RAP2-9-like
SwissprotO221743e-39ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A1E5VTH62e-76A0A1E5VTH6_9POAL; Ethylene-responsive transcription factor ERF008
STRINGPavir.J20437.1.p1e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-30DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]