PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J483000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 171aa    MW: 19648.7 Da    PI: 8.6691
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J483000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.46.3e-2014107190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                        kfY++YA+e+ Fs r+ ++kk   n+ei  ++++ s++g+ +e+ ++      ++++ ++ +etr+gC+a+++vk+ +d+k+++ ++++eH+
  Pavir.J483000.1.p  14 KFYKSYAHEADFSARVGQHKKG--NEEILIKRYYYSRKGFIKENITNgsdeseKKRKTHNVMETRCGCQAHIVVKLGSDQKYRIVSMVEEHS 103
                        6*****************9988..9999***************99999998666666668899***************************** PP

               FAR1  87 Hela 90 
                        H ++
  Pavir.J483000.1.p 104 HGFV 107
                        *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-1814107IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MVGMIFDTLK DVEKFYKSYA HEADFSARVG QHKKGNEEIL IKRYYYSRKG FIKENITNGS  60
DESEKKRKTH NVMETRCGCQ AHIVVKLGSD QKYRIVSMVE EHSHGFVSPD KRHLLISLHT  120
RHNCHGHFIL ITINLCYTAT CEAILVFNFN MPLQFKSFVQ GTVCVCELIT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16569KRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J483000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1213667e-95AC121366.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0111K12, complete sequence.
GenBankAC1376187e-95AC137618.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0090H02, complete sequence.
GenBankAP0149617e-95AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700007.14e-59protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T8IBV33e-57A0A2T8IBV3_9POAL; Uncharacterized protein
STRINGSb01g026910.15e-51(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15006915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-09FAR1-related sequence 5