PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J505800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 353aa    MW: 38449.6 Da    PI: 7.4463
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J505800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-17146195155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pavir.J505800.2.p 146 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 195
                        78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-9146195IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-16146204IPR016177DNA-binding domain
CDDcd000182.86E-11147205No hitNo description
PROSITE profilePS5103217.794147203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-17147204IPR001471AP2/ERF domain
SMARTSM003803.3E-32147209IPR001471AP2/ERF domain
CDDcd000186.38E-13238283No hitNo description
SuperFamilySSF541711.37E-6238282IPR016177DNA-binding domain
SMARTSM003804.2E-13239287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MATSDSGSSE SSVLNAEASG GGAAPAEEGS SSMPPPPAVL EFSILRSESD AAGADDDDDA  60
TPSPPHHHHQ QQQPQLITRE LFPAAAGPPR PPPQHWADLG FFRAEPPLPQ PDIRILPHPH  120
ATPPAPAPVQ PQAAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH  180
AAARAYDRAA IKFRGVDADI NFNLSDYEDD MTQMKSLSKE EFVHVLRRQS TGFSRGSSKY  240
RGVTLHKCGR WEARMGQFLG KKAYDKAAIK CNGREAVTNF EPSTYDGELL SEVGTEAGAD  300
VDLNLSISQP ASQSPKRDKN SLGLQLHHGS FEGSELKRTK ASANSFDMYQ KQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.45581e-130callus| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J505800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806429.11e-180ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotB8AXC31e-146AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2S3H7Y41e-178A0A2S3H7Y4_9POAL; Uncharacterized protein
TrEMBLA0A2T7E7H21e-178A0A2T7E7H2_9POAL; Uncharacterized protein
STRINGPavir.J11433.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.25e-87related to AP2.7