PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J510600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 244aa    MW: 26200.7 Da    PI: 7.169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J510600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.9e-09160200954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++ +L++l+P       +K++ a++L +A++Y+k L
  Pavir.J510600.1.p 160 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 200
                        699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-15152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-15155214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6161200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-6173205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDFDLLNYSP EAQLELMNTM LQLEQLTKLD GGHQSLMAAP VSPPASPVQT HATAHCFSPP  60
PHVSATAAYQ DQYTPPAVYA GRTGALEHLQ VDYALSPCAD GGGAAPQPAG SPSPTSSADA  120
MREAIFHIAA LQPVEIDQEA VRPPKRRNVR ISKDPQSVAA RLRRERISER IRTLQRLVPG  180
GTKMDTASML DEAIHYVKFL KSQVQSLERA AAAAHHRAAA LGAAFHPAAL HAQWQFALPH  240
GDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146RPPKRR
2160165RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J510600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803362.11e-127transcription factor HEC2-like
SwissprotQ9SND42e-40HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2T7ET291e-131A0A2T7ET29_9POAL; Uncharacterized protein
STRINGPavir.J21912.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]