PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J517500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 125aa    MW: 14599.7 Da    PI: 10.3981
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J517500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.51e-132498289
               FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                       f+ +++ ++GF+vrk+ +++s+             + g+r++++++ + ++  r etrt+Cka++++++++  g++ev++++leHnH+l
  Pavir.J517500.1.p 24 FWVAFGGRIGFDVRKRCTNRST-------------MDGHRRKKESE-HVTKCFRDETRTDCKARMVISLDRgAGNYEVIDVVLEHNHPL 98
                       8889999999999999888883.............45566665555.667899******************9***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-103198IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAEVDRKIPE LGLRFNNPDE GWLFWVAFGG RIGFDVRKRC TNRSTMDGHR RKKESEHVTK  60
CFRDETRTDC KARMVISLDR GAGNYEVIDV VLEHNHPLHL PQTFHLMKSQ RKNFITPSFR  120
NRNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13652RKRCTNRSTMDGHRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J517500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040052e-76AP004005.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1188_F05.
GenBankAP0055212e-76AP005521.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0477F03.
GenBankAP0149642e-76AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-76CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688484.11e-61PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA3BT736e-56A3BT73_ORYSJ; Uncharacterized protein
STRINGSb04g038323.17e-50(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.22e-07FAR1 family protein