PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J524000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 297aa MW: 34121.1 Da PI: 7.6295

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J524000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.9	5.6e-11	28	114	6	98
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +p + ++ +++p + +e++ e + ++ l++++g+ +v++ k+++++v+++GW F++ +L +v+F++ ++s+f +v +f Pavir.J524000.1.p 28 MPMKADFQQAMTIPGELVERFRC--EIPAQIALRTRNGNCSTVEV--AKYPDKIVISAGWAAFCDNYDLHMHGSVLFRYGENSQF--YVIIF 113 55666667789*****99963..36678***********..******************************988999..99888 PP - CS B3 98 r 98 + Pavir.J524000.1.p 114 D 114 7 PP
2	B3	33.5	7.6e-11	176	243	9	81
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 d +++ +++p f+++++g+ + +++le+++g+s+ v + k+++++ +++GW Fvk +L + D++ Pavir.J524000.1.p 176 DDFQH-EMTVPVGFVKRFKGE--FPGEIKLETRNGESYCVGV--VKQPDKVSFSSGWGVFVKTYDLHTDDSLH 243 45555.59********888..6669***********..************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.16E-17	20	118	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.0E-15	20	115	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.656	23	116	IPR003340	B3 DNA binding domain
CDD	cd10017	2.56E-8	24	114	No hit	No description
SMART	SM01019	0.18	26	116	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.5E-8	32	114	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.55E-13	166	242	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	7.697	167	261	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-11	167	242	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.011	169	256	IPR003340	B3 DNA binding domain
CDD	cd10017	1.57E-10	169	242	No hit	No description
Pfam	PF02362	1.2E-8	175	242	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGSSCRRCKL RAENAYKNLD DHQKYFLMPM KADFQQAMTI PGELVERFRC EIPAQIALRT 60 RNGNCSTVEV AKYPDKIVIS AGWAAFCDNY DLHMHGSVLF RYGENSQFYV IIFDQFGCEE 120 VLSVLEDYAH LRPHDPERCI DSIEAVKCCE SCKKLDEHKY YNLGNEEKYF LVFMKDDFQH 180 EMTVPVGFVK RFKGEFPGEI KLETRNGESY CVGVVKQPDK VSFSSGWGVF VKTYDLHTDD 240 SLHPYVISQK SRLNKNQNKK ISERLRCMNS GAPIFVAVIC KTNIHGRFDP VRILSV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J524000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0A9CIX3	1e-107	A0A0A9CIX3_ARUDO; Uncharacterized protein
STRING	BRADI1G14500.1	4e-67	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12482	15	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	4e-09	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.J524000.1.p