PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J549100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 214aa    MW: 23767.1 Da    PI: 7.1005
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J549100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS218.63.2e-672212159374
               GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                        +++g+ L+ +Ae lg+ +ef++ v ++le+l++++L ++ +Ea+a+n++l+lh +++es    +   +vL+++++lsPk +v+veq+a hn+
  Pavir.J549100.1.p   2 RAVGRELEAYAEGLGMYLEFRA-VDRSLESLHIDDLGIDADEAVAINSILELHCVVKESRGALN---SVLQTIRKLSPKAFVLVEQDAGHNG 89 
                        789*******************.799******************************88877777...8************************ PP

               GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                        + Fl rf+eal+yy+a+fd+l+a lpr +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++    + a+  l+
  Pavir.J549100.1.p  90 PFFLGRFMEALHYYAAVFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIRMA--ARAREWLE 179
                        *******************************************************************************865..56788888 PP

               GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        + + + gy+v ee+g+lvlgWk++p++++S+W+
  Pavir.J549100.1.p 180 ENAgGGGYTVAEEKGCLVLGWKGKPVIAASCWK 212
                        8887999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.7141193IPR005202Transcription factor GRAS
PfamPF035141.1E-642212IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MRAVGRELEA YAEGLGMYLE FRAVDRSLES LHIDDLGIDA DEAVAINSIL ELHCVVKESR  60
GALNSVLQTI RKLSPKAFVL VEQDAGHNGP FFLGRFMEAL HYYAAVFDAL DAALPRYDAR  120
RARVEQFHFG AEIRNVVGCE GAARVERHER ADQWRRRMSR AGFQSVPIRM AARAREWLEE  180
NAGGGGYTVA EEKGCLVLGW KGKPVIAASC WKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-301211172378Protein SCARECROW
5b3h_A7e-301211171377Protein SCARECROW
5b3h_D7e-301211171377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J549100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814052.11e-149DELLA protein RGL1-like
TrEMBLA0A2T7DCV41e-148A0A2T7DCV4_9POAL; Uncharacterized protein
STRINGPavir.J09064.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-46RGA-like 1