PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J550100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 335aa    MW: 36283 Da    PI: 7.7727
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J550100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53171421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL++k++++++ +  ++ e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk++
  Pavir.J550100.1.p  17 LPPGFRFHPTDEELITHYLARKIADTRFAA-LAVGEADLNKSEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDKDI 107
                        79*************************999.67***************8888899************************************* PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +++lvg kktLvfy+grapkgek+ Wvmheyrl
  Pavir.J550100.1.p 108 FR-GKALVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 142
                        **.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-637169IPR003441NAC domain
PROSITE profilePS5100558.30617169IPR003441NAC domain
PfamPF023656.6E-2918142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDASSAMEQE LHRPMELPPG FRFHPTDEEL ITHYLARKIA DTRFAALAVG EADLNKSEPW  60
DLPSLAKMGE KEWYFFCLKD RKYPTGLRTN RATEAGYWKA TGKDKDIFRG KALVGSKKTL  120
VFYTGRAPKG EKSGWVMHEY RLHGKLPGAA MPNAASSKNE WVLCRVFKKS LVVGVAPAPK  180
RGAMEMDDVA AISHLLPLMD MSAAAAVGNP AAAHVTCFSN ALEGQFFNQT AAPQAAASAT  240
DHLGLASSSP FLSSFAQYGS LHHGGVSLVQ LLESSGYGAG GGSLPDMPKQ QQHKWGGERE  300
RLSASQDTGL TSDAHPEISS SSGQRFEHEQ LWGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-541516915165NO APICAL MERISTEM PROTEIN
1ut4_B8e-541516915165NO APICAL MERISTEM PROTEIN
1ut7_A8e-541516915165NO APICAL MERISTEM PROTEIN
1ut7_B8e-541516915165NO APICAL MERISTEM PROTEIN
3swm_A8e-541516918168NAC domain-containing protein 19
3swm_B8e-541516918168NAC domain-containing protein 19
3swm_C8e-541516918168NAC domain-containing protein 19
3swm_D8e-541516918168NAC domain-containing protein 19
3swp_A8e-541516918168NAC domain-containing protein 19
3swp_B8e-541516918168NAC domain-containing protein 19
3swp_C8e-541516918168NAC domain-containing protein 19
3swp_D8e-541516918168NAC domain-containing protein 19
4dul_A8e-541516915165NAC domain-containing protein 19
4dul_B8e-541516915165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.16800.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00496DAPTransfer from AT5G07680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J550100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0607700.0BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds.
GenBankBT0635430.0BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds.
GenBankBT0844930.0BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds.
GenBankEU9682330.0EU968233.1 Zea mays clone 317195 NAC domain protein NAC5 mRNA, complete cds.
GenBankJX4285300.0JX428530.1 Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826317.10.0NAC domain-containing protein 92-like
RefseqXP_025826319.10.0NAC domain-containing protein 92-like
RefseqXP_025826320.10.0NAC domain-containing protein 92-like
RefseqXP_025826321.10.0NAC domain-containing protein 92-like
TrEMBLA0A2T7CVX40.0A0A2T7CVX4_9POAL; Uncharacterized protein
STRINGPavir.J23199.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.15e-93NAC domain containing protein 80