PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J557300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 196aa MW: 20150.3 Da PI: 9.832

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J557300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.7	3.3e-35	12	66	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCy+nny+++qPr+fC+aCrryWt GG+lrnvPvGg++rk+ + Pavir.J557300.1.p 12 EQCPRCASRDTKFCYFNNYNTAQPRHFCRACRRYWTLGGSLRNVPVGGATRKRPR 66 68*************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.4E-30	12	64	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.531	12	66	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-19	13	57	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	14	50	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MEAAAAAAAG REQCPRCASR DTKFCYFNNY NTAQPRHFCR ACRRYWTLGG SLRNVPVGGA 60 TRKRPRPPRR PPITRAIAAA AAAPGLLQGA AGGLLASLLL DLGSAPPPVL QGRLIGSDSL 120 GLGQPAPLAA AGSADLALAH LDFGVGDPLL WPAATTMVLE GDRAFPLPPP AALWPELTAA 180 VPPALHHGGS PHLLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	66	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J557300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY661659	4e-69	AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
GenBank	HQ540084	4e-69	HQ540084.1 Sorghum bicolor clone SbDof1 Dof-type zinc finger protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153027.1	3e-38	dof zinc finger protein DOF3.1-like
Refseq	XP_020171952.1	3e-38	dof zinc finger protein DOF3.1-like
TrEMBL	A0A2T7EIN5	3e-56	A0A2T7EIN5_9POAL; Uncharacterized protein
STRING	Pavir.Ca02552.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	1e-22	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.J557300.1.p