PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J566300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 379aa    MW: 40372.3 Da    PI: 8.4619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J566300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS207.57.5e-64723792298
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +lLl+ + a ++gd ++a+a+L ++  +as +g dp  R+aayf+ ALa  l   ++ ++   +p++t      e++ a+++f+++sP+++
  Pavir.J566300.1.p  72 MQLLLSSVAAGEAGDVRAATAALHEVYRRASFRGgDPALRVAAYFADALAPGLRLRSPATA--ASPRPT----PGEQFLAYTMFYQASPLYQ 157
                        68999**************************9999***************98887344443..444444....46788999*********** PP

               GRAS  93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg..............ppslRiTgvgspesgskeeleetgerLakf 168
                        f+h+taNqaI+ea+e    + +H++Dfd+s+G+QWp+L+q+L++ +++              p slRiTg+g     s++el++t+ rL +f
  Pavir.J566300.1.p 158 FAHFTANQAIVEAFEAGgrRSLHVVDFDVSYGFQWPSLIQSLSDAAADaastsgshdgdckePVSLRITGLGT----SADELRQTKARLMRF 245
                        **************97765899*********************888444556677888888677*********....9************** PP

               GRAS 169 Aeel.gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.....sF 253
                        A+ + +v+fef+ +v++  ++ + e+++ +  + +++Vnl++   +  + s+    e  + L  ++sl+P +v +ve+    n++     s+
  Pavir.J566300.1.p 246 ASGCpNVRFEFEGIVTSGPSSGRHERIKNDDdDATVVVNLAFPASQSSRASAR---EACSALARIRSLNPSLVFLVERGGAGNATprgrsSL 334
                        *98769********999***********9995667888999977766633333...3569******************976665555555** PP

               GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                        +  f+ +l+y++a+fdsl+++lp++s er  +Er +lg ei+n+v
  Pavir.J566300.1.p 335 VPPFTASLRYFAAVFDSLHESLPADSAERLAIERNYLGTEIRNAV 379
                        *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.36845379IPR005202Transcription factor GRAS
PfamPF035142.6E-6172379IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MNLTLSLAVN GGTGTGKKRK VRDGVVDDVG DGGDRGRVVR LLQARERMVV RLESDDQRVA  60
PDAAAAGGLR LMQLLLSSVA AGEAGDVRAA TAALHEVYRR ASFRGGDPAL RVAAYFADAL  120
APGLRLRSPA TAASPRPTPG EQFLAYTMFY QASPLYQFAH FTANQAIVEA FEAGGRRSLH  180
VVDFDVSYGF QWPSLIQSLS DAAADAASTS GSHDGDCKEP VSLRITGLGT SADELRQTKA  240
RLMRFASGCP NVRFEFEGIV TSGPSSGRHE RIKNDDDDAT VVVNLAFPAS QSSRASAREA  300
CSALARIRSL NPSLVFLVER GGAGNATPRG RSSLVPPFTA SLRYFAAVFD SLHESLPADS  360
AERLAIERNY LGTEIRNAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2610637953304Protein SCARECROW
5b3h_A3e-2610637952303Protein SCARECROW
5b3h_D3e-2610637952303Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J566300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432540.0AC243254.2 Panicum virgatum clone PV_ABa094-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975641.10.0DELLA protein DWARF8
TrEMBLA0A3L6Q7350.0A0A3L6Q735_PANMI; DELLA protein DWARF8-like
STRINGPavir.J22606.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.16e-31GRAS family protein