PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J571400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 611aa    MW: 70406 Da    PI: 7.9628
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J571400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.84.8e-2011129190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............................tekerrtraetrtgC 62 
                        +fYn+YAk++GFs+r+s+++ s+ ++e  k +fvC+keg  ++  ++                                k+r+ ++ + t+C
  Pavir.J571400.1.p  11 EFYNSYAKRIGFSTRTSTTRLSSLSREQNKVQFVCNKEGLGRKVIEDqvtavsddsnydeedsedgndgsvkkkkfdGGKKRKMEKMQYTDC 102
                        6***************************************999988899************************999888999999******* PP

               FAR1  63 kaklkvkkekdgkwevtkleleHnHela 90 
                        ka+++vk+   ++w+v+ +  +HnH+l+
  Pavir.J571400.1.p 103 KARIVVKLI-ANRWHVIYFAPDHNHDLV 129
                        *********.9**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1811129IPR004330FAR1 DNA binding domain
PfamPF105511.1E-33253345IPR018289MULE transposase domain
PROSITE profilePS509669.062439475IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
QTFISKQEAR EFYNSYAKRI GFSTRTSTTR LSSLSREQNK VQFVCNKEGL GRKVIEDQVT  60
AVSDDSNYDE EDSEDGNDGS VKKKKFDGGK KRKMEKMQYT DCKARIVVKL IANRWHVIYF  120
APDHNHDLVV KPSLKKFLRS HKGIPKEEKE SIALLHGCNL STGRIMQLMN EFYGSAQLVP  180
YEGKDVGNFR STIRRIEKYK DVQKILDYFR ELEQEDPEFF YKIKLDADHR VECLFWVDSA  240
ARHAYIESYS DLVSFDATYV TNMYDMSFAP FIGINKHGHS FMLGCAFIRD EKTPSYIWLF  300
ETFLETMKGK SPVSIITDQD ATMRAAITQV FPNTNHRNCR WHIMDKFSGT IGHVLDKDEE  360
LRDDFKECLN YTVTPDEFET KWVEMINKYH LGDDVHFQHL YAIQSSFKTA EYDVKSEGQF  420
QYWLVPNNNF VYGYGKRNYL VTALEEEENY CCECSKVDRD GMLCCHILKV MTRLGVKAIP  480
QRYILKRWTQ EAVPDNEGDA PNAHVQADFI ARGMPLNNKK TVWFTNLSTS FAKLAVEGCV  540
SKEVYTIMDN HIKQIRIEVD EVKKRKKKNT QRGRKCQASK PEPEALNSVP AGPGASENAS  600
LLAPIPTGKK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1562566KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J571400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1W0W3C70.0A0A1W0W3C7_SORBI; Uncharacterized protein (Fragment)
STRINGPavir.Ha00557.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-70FAR1-related sequence 5